indicspecies - Relationship Between Species and Groups of Sites

Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].

Last updated 3 months ago

9.09 score 8 stars 4 packages 316 scripts 2.0k downloads

meteoland - Landscape Meteorology Tools

Functions to estimate weather variables at any position of a landscape [De Caceres et al. (2018) <doi:10.1016/j.envsoft.2018.08.003>].

Last updated 1 months ago

7.81 score 10 stars 2 packages 89 scripts 835 downloads

medfate - Mediterranean Forest Simulation

Simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>; De Caceres et al. (2021) <doi:10.1016/j.agrformet.2020.108233>].

Last updated 10 days ago

7.55 score 11 stars 1 packages 173 scripts 571 downloads

vegclust - Fuzzy Clustering of Vegetation Data

A set of functions to: (1) perform fuzzy clustering of vegetation data (De Caceres et al, 2010) <doi:10.1111/j.1654-1103.2010.01211.x>; (2) to assess ecological community similarity on the basis of structure and composition (De Caceres et al, 2013) <doi:10.1111/2041-210X.12116>.

Last updated 4 months ago

6.25 score 2 stars 6 packages 49 scripts 822 downloads

medfateland - Mediterranean Landscape Simulation

Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.

Last updated 25 days ago

5.34 score 5 stars 34 scripts 375 downloads

ecotraj - Ecological Trajectory Analysis

Assists ecologists in the analysis of temporal changes of ecosystems, defined as trajectories on a chosen multivariate space, by providing a set of trajectory metrics and visual representations [De Caceres et al. (2019) <doi:10.1002/ecm.1350>; and Sturbois et al. (2021) <doi:10.1016/j.ecolmodel.2020.109400>]. Includes functions to estimate metrics for individual trajectories (length, directionality, angles, ...) as well as metrics to relate pairs of trajectories (dissimilarity and convergence). Functions are also provided to estimate the ecological quality of ecosystem with respect to reference conditions [Sturbois et al. (2023) <doi:10.1002/ecs2.4726>].

Last updated 3 months ago

4.37 score 3 stars 1 packages 13 scripts 332 downloads